PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019567-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 269aa    MW: 29475.9 Da    PI: 7.273
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019567-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.53.9e-37101022103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d++ +++isw+e g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g
  SMil_00019567-RA_Salv  10 FLTKTYNLVDDPASDDVISWNEAGTAFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFKRG 88 
                            9***************************************************************9999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +kell +i+r+k++
  SMil_00019567-RA_Salv  89 QKELLVQIRRRKTA 102
                            ***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-38394IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.7E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYNLVDD PASDDVISWN EAGTAFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANENFKRGQK ELLVQIRRRK TATTTQNPAN GRAGAGAGDN  120
LASPATSGED LGSSSTSSPD SKNPSSLETQ ATAQLADLSG ENEKLRKDNQ MLSYELAQTK  180
KQCDELIAFL TQCVKVAPDE ISHIMNLGAK SAGYGNADCG DDEDNDENDK CMKLFGVVVK  240
KKRGCCSGGG ADLCGPHKKQ MKPWMESNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-27510416125Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.11e-139PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-102HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067KI291e-116A0A067KI29_JATCU; Uncharacterized protein
STRINGVIT_07s0031g00670.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-73heat shock factor 4